SuRE

Survey of Regulatory Elements is a massively parallel reporter assay. Some key differences compared to most other MPRAs are:

  • It uses genomic DNA fragments rather than synthetic oligonucleotides. This makes it possible to query larger DNA elements.
  • It can assay hundreds of millions of random DNA fragments, sufficient to obtain quantitative data for entire human genomes.
  • It can detect transcriptional activity of both promoters and enhancers.
  • It can be used to determine the impact of millions of human SNPs on the activity of regulatory elements.

 

Publications:

Genome-wide mapping of autonomous promoter activity in human cells. Van Arensbergen J*, FitzPatrick VD, de Haas M, Pagie L, Sluimer J, Bussemaker HJ*, van Steensel B*. Nature Biotechnol. 2017 Feb;35(2):145-153

Systematic identification of human SNPs affecting regulatory element activity. Van Arensbergen J, Pagie L, FitzPatrick V, de Haas M, Baltissen M, Comoglio F, van der Weide R, Teunissen H, Võsa U, Franke U, de Wit E, Vermeulen M, Bussemaker HJ, van Steensel B.  bioRxiv 460402